Index

A

adjust_ref_seq() (seq_tables.seqtable method)

C

compare_to_reference() (seq_tables.seqtable method)

convert_low_bases_to_null() (seq_tables.seqtable method)

D

draw_seqlogo_barplots() (in module seq_tables)

G

get_consensus() (seq_tables.seqtable method) get_quality_dist() (in module seq_tables) (seq_tables.seqtable method)

get_seq_dist() (seq_tables.seqtable method)

H

hamming_distance() (seq_tables.seqtable method)

M

mutation_profile() (seq_tables.seqtable method) mutation_profile_deprecated() (seq_tables.seqtable method)

mutation_TS_TV_profile() (seq_tables.seqtable method)

Q

qual_table (seq_tables.seqtable attribute) qual_to_table() (seq_tables.seqtable method)

quality_filter() (seq_tables.seqtable method)

R

read_fastq() (in module seq_tables)

read_sam() (in module seq_tables)

S

seq_df (seq_tables.seqtable attribute) seq_table (seq_tables.seqtable attribute) seq_tables (module)

seqtable (class in seq_tables) subsample() (seq_tables.seqtable method)

T

table_to_seq() (seq_tables.seqtable method)

U

update_seqdf() (seq_tables.seqtable method)